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StatisticResults_MCRPURE_mdatools Class

Source: R/class_StatisticResults_MCRPURE_mdatools.R
StatisticResults_MCRPURE_mdatools.Rd

Class for storing results of MCR-PURE models created with the mdatools package.

Usage

StatisticResults_MCRPURE_mdatools(model = list())

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
validate_object(x)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
summary(object, ...)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
plot_overview(x, ...)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
get_model_data(x)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
predict(x, data)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
test(x, data)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
plot_explained_variance(
  x,
  interactive = TRUE,
  xLab = NULL,
  yLab = NULL,
  title = NULL,
  showText = TRUE,
  showLegend = TRUE
)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
plot_cumulative_explained_variance(
  x,
  interactive = TRUE,
  xLab = NULL,
  yLab = NULL,
  title = NULL,
  showText = TRUE,
  showLegend = TRUE
)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
plot_resolved_spectra(
  x,
  interactive = TRUE,
  pcs = NULL,
  xLab = NULL,
  yLab = NULL,
  title = NULL,
  showText = TRUE,
  showLegend = TRUE
)

# S3 method for class 'StatisticResults_MCRPURE_mdatools'
plot_contributions(
  x,
  interactive = TRUE,
  pcs = NULL,
  xLab = NULL,
  yLab = NULL,
  title = NULL
)

Arguments

model

A mcrpure object created with the mdatools package.

x

A StatisticResults_MCRPURE_mdatools object.

object

A StatisticResults_MCRPURE_mdatools object.

...

Additional arguments passed to the plot function.

data

A data frame containing the new data to test or predict.

interactive

Logical (length 1). When TRUE, the data is plotted interactively using plotly.

xLab

A string with the title for the x axis.

yLab

A string with the title for the y axis.

title

A string with the title.

showText

Logical (length 1), set to TRUE to show the text annotations.

showLegend

Logical (length 1). Set to TRUE to show legend.

pcs

A vector of integers specifying the principal components to plot. If NULL, all components are plotted.

Methods (by generic)

  • validate_object(StatisticResults_MCRPURE_mdatools): Validate the object, return NULL if valid.

  • summary(StatisticResults_MCRPURE_mdatools): Print a summary of the model.

  • plot_overview(StatisticResults_MCRPURE_mdatools): Plot the explained variance of the MCRPURE model.

  • get_model_data(StatisticResults_MCRPURE_mdatools): Get the model data as a list of data frames.

  • predict(StatisticResults_MCRPURE_mdatools): Predict new data using the MCRPURE model.

  • test(StatisticResults_MCRPURE_mdatools): Test new data using the MCRPURE model.

  • plot_explained_variance(StatisticResults_MCRPURE_mdatools): Plot the explained variance of the model.

  • plot_cumulative_explained_variance(StatisticResults_MCRPURE_mdatools): Plot the cumulative explained variance of the model.

  • plot_resolved_spectra(StatisticResults_MCRPURE_mdatools): Plot the resolved spectra of the MCRPURE model.

  • plot_contributions(StatisticResults_MCRPURE_mdatools): Plot the contributions of the resolved spectra.